- Data file
- PDF file
- Number of MS2 spectra
- Per sample, across fraction (boxplot) , without the same scale
- Per sample, across fraction (boxplot) , with the same scale
- Per sample, versus fraction (scatterplot), without the same scale
- Per sample, versus fraction (scatterplot), with the same scale
- Number of MS2 spectra versus fraction (boxplot), without the same scale
- Number of MS2 spectra versus fraction (boxplot), with the same scale
- Precursor intensity values
- Precursor m/z values
- Precursor Molecular weight (MW) values
- Per sample, versus fraction (scatterplot), without the same scale
- Per sample, versus fraction (scatterplot), with the same scale
- Per sample, across fraction at 50 percentile (boxplot), without the same scale
- Per sample, across fraction at 50 percentile (boxplot), with the same scale
- Per sample, across fraction (boxplot), without the same scale
- Per sample, across fraction (boxplot), with the same scale
- MS2 per MS1 values
- Different MS2 charge state to MS2 charge 2 ratio
Data file
We used the “CompRefBI_mzml_metricInfo_all_id.07272017.tsv” data file in this report. To see the data file in tsv format, please click
Here
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PDF file
To generate the PDF file of this report please run the following code in the R command line “rmarkdown::render(”./static_dv7_17.Rmd“, output_format=”pdf_document“)” To view the generated PDF file, please click
Here
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Number of MS2 spectra
Per sample, across fraction (boxplot) , without the same scale
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Per sample, across fraction (boxplot) , with the same scale
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Per sample, versus fraction (scatterplot), without the same scale
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Per sample, versus fraction (scatterplot), with the same scale
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Number of MS2 spectra versus fraction (boxplot), without the same scale
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Number of MS2 spectra versus fraction (boxplot), with the same scale
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Precursor intensity values
Range of Precursor intensity values For all spectra
This table shows the range of the precursor intensity for each percentile, as a summary and to see if there are any value of 0 that cannot be log-transformed
|
|
5th Perc
|
25th perc
|
50th perc
|
75th perc
|
95th perc
|
|
range
|
0, 0
|
13921.04, 2785124.75
|
50261.56, 8182241.5
|
140378.73, 20557060
|
1450821.96, 86219475.2
|
|
range of log10 transformed
|
-Inf, -Inf
|
4.14, 6.44
|
4.7, 6.91
|
5.15, 7.31
|
6.16, 7.94
|
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Range of Precursor intensity values For identified spectra
This table shows the range of the precursor intensity for each percentile, as a summary and to see if there are any value of 0 that cannot be log-transformed
|
|
5th Perc
|
25th perc
|
50th perc
|
75th perc
|
95th perc
|
|
range
|
0, 105641.58
|
190316.07, 5425278
|
394277.41, 12651390
|
992609.34, 30232546
|
6000430.85, 131598537.6
|
|
range of log10 transformed
|
-Inf, 5.02
|
5.28, 6.73
|
5.6, 7.1
|
6, 7.48
|
6.78, 8.12
|
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Per sample, versus fraction (scatterplot), with the same scale
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Percentage of 0 precursor intensities at different percentiles, For all spectra
In this table, each row represents a fraction and each column represents a percentile. Each value represents the percent of samples that have a precursor intensity of 0 at that fraction and that percentile.
|
|
5th Perc
|
25th Perc
|
50th Perc
|
75th Perc
|
95th Perc
|
|
fraction1
|
100
|
0
|
0
|
0
|
0
|
|
fraction2
|
100
|
0
|
0
|
0
|
0
|
|
fraction3
|
100
|
0
|
0
|
0
|
0
|
|
fraction4
|
100
|
0
|
0
|
0
|
0
|
|
fraction5
|
100
|
0
|
0
|
0
|
0
|
|
fraction6
|
100
|
0
|
0
|
0
|
0
|
|
fraction7
|
100
|
0
|
0
|
0
|
0
|
|
fraction8
|
100
|
0
|
0
|
0
|
0
|
|
fraction9
|
100
|
0
|
0
|
0
|
0
|
|
fraction10
|
100
|
0
|
0
|
0
|
0
|
|
fraction11
|
100
|
0
|
0
|
0
|
0
|
|
fraction12
|
100
|
0
|
0
|
0
|
0
|
|
fraction13
|
100
|
0
|
0
|
0
|
0
|
|
fraction14
|
100
|
0
|
0
|
0
|
0
|
|
fraction15
|
100
|
0
|
0
|
0
|
0
|
|
fraction16
|
100
|
0
|
0
|
0
|
0
|
|
fraction17
|
100
|
0
|
0
|
0
|
0
|
|
fraction18
|
100
|
0
|
0
|
0
|
0
|
|
fraction19
|
100
|
0
|
0
|
0
|
0
|
|
fraction20
|
100
|
0
|
0
|
0
|
0
|
|
fraction21
|
100
|
0
|
0
|
0
|
0
|
|
fraction22
|
100
|
0
|
0
|
0
|
0
|
|
fraction23
|
100
|
0
|
0
|
0
|
0
|
|
fraction24
|
100
|
0
|
0
|
0
|
0
|
|
fraction25
|
100
|
0
|
0
|
0
|
0
|
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Percentage of 0 precursor intensities at different percentiles, For identified spectra
In this table, each row represents a fraction and each column represents a percentile. Each value represents the percent of samples that have a precursor intensity of 0 at that fraction and that percentile.
|
|
5th Perc
|
25th Perc
|
50th Perc
|
75th Perc
|
95th Perc
|
|
fraction1
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction2
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction3
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction4
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction5
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction6
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction7
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction8
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction9
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction10
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction11
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction12
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction13
|
66.667
|
0
|
0
|
0
|
0
|
|
fraction14
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction15
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction16
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction17
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction18
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction19
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction20
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction21
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction22
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction23
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction24
|
100.000
|
0
|
0
|
0
|
0
|
|
fraction25
|
0.000
|
0
|
0
|
0
|
0
|
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Precursor m/z values
Per sample, versus fraction (scatterplot), without the same scale
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Per sample, versus fraction (scatterplot), with same scale
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Precursor Molecular weight (MW) values
Per sample, versus fraction (scatterplot), without the same scale
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Per sample, versus fraction (scatterplot), with the same scale
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Per sample, across fraction at 50 percentile (boxplot), without the same scale
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Per sample, across fraction at 50 percentile (boxplot), with the same scale
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Per sample, across fraction (boxplot), without the same scale
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Per sample, across fraction (boxplot), with the same scale
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MS2 per MS1 values
Per sample, versus fraction (scatterplot), without the same scale
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Per sample, versus fraction (scatterplot), with the same scale
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Table of values less than 20 for all spectra
In this table the percent for the values less than 20 are present, each column is a different percentile
Percent of samples’ value less than 20
|
|
5th Perc
|
25th Perc
|
50th Perc
|
75th Perc
|
95th Perc
|
|
00CPTAC_P5P6CompRef_W_BI_20160623_BL
|
100
|
100
|
100
|
100
|
100
|
|
01CPTAC_CompRef_W_BI_20160908_BL
|
100
|
100
|
100
|
100
|
100
|
|
02CPTAC_CompRef_W_BI_20161028_BL
|
100
|
100
|
100
|
100
|
100
|
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Table of values less than 20 for identified spectra
In this table the percent for the values less than 20 are present, each column is a different percentile
Percent of samples’ value less than 20
|
|
5th Perc
|
25th Perc
|
50th Perc
|
75th Perc
|
95th Perc
|
|
00CPTAC_P5P6CompRef_W_BI_20160623_BL
|
100
|
100
|
100
|
100
|
100
|
|
01CPTAC_CompRef_W_BI_20160908_BL
|
100
|
100
|
100
|
100
|
100
|
|
02CPTAC_CompRef_W_BI_20161028_BL
|
100
|
100
|
100
|
100
|
100
|
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Different MS2 charge state to MS2 charge 2 ratio
Per sample, versus fraction (scatterplot), without the same scale
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Per sample, versus fraction (scatterplot), with the same scale
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